Sorry, this thread was from back in June, I don't remember what I did in June, but whatever it was was fixed. You can research the svn logs if you really need to find out changes for that time period.
If you are getting some similar error it is not likely related. Please if you are having a new issue start a new thread and post a stack trace.
I deploy the files based on their file extension using UnLeashIt.
There is some info on our FAQ page about things that are possible to leave out.
Hope it helps,